Quick Start

This page gives the shortest path to start using the workstation.

1 1. Connect to the workstation

Replace username with your own username.

ssh username@mod-linux-ws01

If you are using Windows, you can connect using PuTTY, MobaXterm, Windows Terminal, or VS Code Remote SSH.

hostname
whoami
pwd

sinfo

This shows whether the Slurm compute partition is available.

ls
ls -lh

Example for R:

conda activate R-4.4

Example for Python:

conda activate py311

The exact environment names may change. To see available conda environments:

conda env list

or:

mamba env list

Create a file called job.sh:

nano job.sh

Example Slurm job:

#!/bin/bash
#SBATCH --job-name=test-job
#SBATCH --cpus-per-task=1
#SBATCH --mem=2G
#SBATCH --output=test-job.out

hostname
date

Submit it:

sbatch job.sh

Check the queue:

squeue

Check the output:

cat test-job.out

exit